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05 July 2020
 
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Results 1 to 20 of 67 for query "Mark Gerstein". (0.03 sec.)

[    1    2    3    4    ]   Next
1.
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Alexandrov, Vadim; Gerstein, Mark;
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2.
A method to assess compositional bias in biological sequences and its application to prion-like glutamine/asparagine-rich domains in eukaryotic proteomes
Harrison, Paul M; Gerstein, Mark;
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3.
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
; Ewan Birney; John A Stamatoyannopoulos; Anindya Dutta; Roderic Guigó; Thomas R Gingeras; Elliott H Margulies; Zhiping Weng; Michael Snyder; Emmanouil T Dermitzakis; Robert E Thurman; Michael S Kuehn; Christopher M Taylor; Shane Neph; Christoph M Koch; Saurabh Asthana; Ankit Malhotra; Ivan Adzhubei; Jason A Greenbaum; Robert M Andrews; Paul Flicek; Patrick J Boyle; Hua Cao; Nigel P Carter; Gayle K Clell; Sean Davis; Nathan Day; Pawandeep Dhami; Shane C Dillon; Michael O Dorschner; Heike Fiegler; Paul G Giresi; Jeff Goldy; Michael Hawrylycz; Andrew Haydock; Richard Humbert; Keith D James; Brett E Johnson; Ericka M Johnson; Tristan T Frum; Elizabeth R Rosenzweig; Neerja Karnani; Kirsten Lee; Gregory C Lefebvre; Patrick A Navas; Fidencio Neri; Stephen C J Parker; Peter J Sabo; Richard Sandstrom; Anthony Shafer; David Vetrie; Molly Weaver; Sarah Wilcox; Man Yu; Francis S Collins; Job Dekker; Jason D Lieb; Thomas D Tullius; Gregory E Crawford; Shamil Sunyaev; William S Noble; Ian Dunham; France Denoeud; Alexandre Reymond; Philipp Kapranov; Joel Rozowsky; Deyou Zheng; Robert Castelo; Adam Frankish; Jennifer Harrow; Srinka Ghosh; Albin Sandelin; Ivo L Hofacker; Robert Baertsch; Damian Keefe; Sujit Dike; Jill Cheng; Heather A Hirsch; Edward A Sekinger; Julien Lagarde; Josep F Abril; Atif Shahab; Christoph Flamm; Claudia Fried; Jörg Hackermüller; Jana Hertel; Manja Lindemeyer; Kristin Missal; Andrea Tanzer; Stefan Washietl; Jan Korbel; Olof Emanuelsson; Jakob S Pedersen; Nancy Holroyd; Ruth Taylor; David Swarbreck; Nicholas Matthews; Mark C Dickson; Daryl J Thomas; Matthew T Weirauch; James Gilbert; Jorg Drenkow; Ian Bell; XiaoDong Zhao; K G Srinivasan; Wing-Kin Sung; Hong Sain Ooi; Kuo Ping Chiu; Sylvain Foissac; Tyler Alioto; Michael Brent; Lior Pachter; Michael L Tress; Alfonso Valencia; Siew Woh Choo; Chiou Yu Choo; Catherine Ucla; Caroline Manzano; Carine Wyss; Evelyn Cheung; Taane G Clark; James B Brown; Madhavan Ganesh; Sandeep Patel; Hari Tammana; Jacqueline Chrast; Charlotte N Henrichsen; Chikatoshi Kai; Jun Kawai; Ugrappa Nagalakshmi; Jiaqian Wu; Zheng Lian; Jin Lian; Peter Newburger; Xueqing Zhang; Peter Bickel; John S Mattick; Piero Carninci; Yoshihide Hayashizaki; Sherman Weissman; Tim Hubbard; Richard M Myers; Jane Rogers; Peter F Stadler; Todd M Lowe; Chia-Lin Wei; Yijun Ruan; Kevin Struhl; Mark Gerstein; Stylianos E Antonarakis; Yutao Fu; Eric D Green; Ula? Karaöz; Adam Siepel; James Taylor; Laura A Liefer; Kris A Wetterstr; Peter J Good; Elise A Feingold; Mark S Guyer; Gregory M Cooper; George Asimenos; Colin N Dewey; Minmei Hou; Sergey Nikolaev; Juan I Montoya-Burgos; Ari Löytynoja; Simon Whelan; Fabio Pardi; Tim Massingham; Haiyan Huang; Nancy R Zhang; Ian Holmes; James C Mullikin; Abel Ureta-Vidal; Benedict Paten; Michael Seringhaus; Deanna Church; Kate Rosenbloom; W James Kent; Eric A Stone; ; ; ; ; ; Serafim Batzoglou; Nick Goldman; Ross C Hardison; David Haussler; Webb Miller; Arend Sidow; Nathan D Trinklein; Zhengdong D Zhang; Leah Barrera; Rhona Stuart; David C King; Adam Ameur; Stefan Enroth; Mark C Bieda; Jonghwan Kim; Akshay A Bhinge; Nan Jiang; Jun Liu; Fei Yao; Vinsensius B Vega; Charlie W H Lee; Patrick Ng; Atif Shahab; Annie Yang; Zarmik Moqtaderi; Zhou Zhu; Xiaoqin Xu; Sharon Squazzo; Matthew J Oberley; David Inman; Michael A Singer; Todd A Richmond; Kyle J Munn; Alvaro Rada-Iglesias; Ola Wallerman; Jan Komorowski; Joanna C Fowler; Phillippe Couttet; Alexander W Bruce; Oliver M Dovey; Peter D Ellis; Cordelia F Langford; David A Nix; Ghia Euskirchen; Stephen Hartman; Alexander E Urban; Peter Kraus; Sara Van Calcar; Nate Heintzman; Tae Hoon Kim; Kun Wang; Chunxu Qu; Gary Hon; Rosa Luna; Christopher K Glass; M Geoff Rosenfeld; Shelley Force Aldred; Sara J Cooper; Anason Halees; Jane M Lin; Hennady P Shulha; Xiaoling Zhang; Mousheng Xu; Jaafar N S Haidar; Yong Yu; Yijun Ruan; Vishwanath R Iyer; Rol; D Green; Claes Wadelius; Peggy J Farnham; Bing Ren; Rachel A Harte; Angie S Hinrichs; Heather Trumbower; Hiram Clawson; Jennifer Hillman-Jackson; Ann S Zweig; Kayla Smith; Archana Thakkapallayil; Galt Barber; Robert M Kuhn; Donna Karolchik; Lluis Armengol; Christine P Bird; Paul I W de Bakker; Andrew D Kern; Nuria Lopez-Bigas; Joel D Martin; Barbara E Stranger; Abigail Woodroffe; Eugene Davydov; Antigone Dimas; Eduardo Eyras; Ingileif B Hallgrímsdóttir; Julian Huppert; Michael C Zody; Gonçalo R Abecasis; Xavier Estivill; Gerard G Bouffard; Xiaobin Guan; Nancy F Hansen; Jacquelyn R Idol; Valerie V B Maduro; Baishali Maskeri; Jennifer C McDowell; Morgan Park; Pamela J Thomas; Alice C Young; Robert W Blakesley; Donna M Muzny; Erica Sodergren; David A Wheeler; Kim C Worley; Huaiyang Jiang; George M Weinstock; Richard A Gibbs; Tina Graves; Robert Fulton; Elaine R Mardis; Richard K Wilson; Michele Clamp; James Cuff; Sante Gnerre; David B Jaffe; Jean L Chang; Kerstin Lindblad-Toh; Eric S Lander; Maxim Koriabine; Mikhail Nefedov; Kazutoyo Osoegawa; Yuko Yoshinaga; Baoli Zhu; Pieter J de Jong;
14 Jun 2007   /  Nature, 447 (7146), 799-816
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4.
Functional profiling of the Saccharomyces cerevisiae genome
Guri Giaever; Angela M Chu; Li Ni; Carla Connelly; Linda Riles; Steeve Véronneau; Sally Dow; Ankuta Lucau-Danila; Keith Anderson; Bruno André; Adam P Arkin; Anna Astromoff; Mohamed El-Bakkoury; Rhonda Bangham; Rocio Benito; Sophie Brachat; Stefano Campanaro; Matt Curtiss; Karen Davis; Adam Deutschbauer; Karl-Dieter Entian; Patrick Flaherty; Francoise Foury; David J Garfinkel; Mark Gerstein; Deanna Gotte; Ulrich Güldener; Johannes H Hegemann; Svenja Hempel; Zelek Herman; Daniel F Jaramillo; Diane E Kelly; Steven L Kelly; Peter Kötter; Darlene LaBonte; David C Lamb; Ning Lan; Hong Liang; Hong Liao; Lucy Liu; Chuanyun Luo; Marc Lussier; Rong Mao; Patrice Menard; Siew Loon Ooi; Jose L Revuelta; Christopher J Roberts; Matthias Rose; Petra Ross-Macdonald; Bart Scherens; Greg Schimmack; Brenda Shafer; Daniel D Shoemaker; Sharon Sookhai-Mahadeo; Reginald K Storms; Jeffrey N Strathern; Giorgio Valle; Marleen Voet; Guido Volckaert; Ching-yun Wang; Teresa R Ward; Julie Wilhelmy; Elizabeth A Winzeler; Yonghong Yang; Grace Yen; Elaine Youngman; Kexin Yu; Howard Bussey; Jef D Boeke; Michael Snyder; Peter Philippsen; Ronald W Davis; Mark Johnston;
25 Jul 2002   /  Nature, 418 (6896), 387-91
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5.
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
Nevan J Krogan; Gerard Cagney; Haiyuan Yu; Gouqing Zhong; Xinghua Guo; Alexandr Ignatchenko; Joyce Li; Shuye Pu; Nira Datta; Aaron P Tikuisis; Thanuja Punna; José M Peregrín-Alvarez; Michael Shales; Xin Zhang; Michael Davey; Mark D Robinson; Alberto Paccanaro; James E Bray; Anthony Sheung; Bryan Beattie; Dawn P Richards; Veronica Canadien; Atanas Lalev; Frank Mena; Peter Wong; Andrei Starostine; Myra M Canete; James Vlasblom; Samuel Wu; Chris Orsi; Sean R Collins; Shamanta Chandran; Robin Haw; Jennifer J Rilstone; Kiran Gandi; Natalie J Thompson; Gabe Musso; Peter St Onge; Shaun Ghanny; Mandy H Y Lam; Gareth Butl; Amin M Altaf-Ul; Shigehiko Kanaya; Ali Shilatifard; Erin O'Shea; Jonathan S Weissman; C James Ingles; Timothy R Hughes; John Parkinson; Mark Gerstein; Shoshana J Wodak; Andrew Emili; Jack F Greenblatt;
30 Mar 2006   /  Nature, 440 (7084), 637-43
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6.
Proteomics. Integrating interactomes
Mark Gerstein; Ning Lan; Ronald Jansen;
11 Jan 2002   /  Science, 295 (5553), 284-7
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7.
Genomics. Defining genes in the genomics era
Michael Snyder; Mark Gerstein;
11 Apr 2003   /  Science, 300 (5617), 258-60
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8.
A Bayesian networks approach for predicting protein-protein interactions from genomic data
Ronald Jansen; Haiyuan Yu; Dov Greenbaum; Yuval Kluger; Nevan J Krogan; Sambath Chung; Andrew Emili; Michael Snyder; Jack F Greenblatt; Mark Gerstein;
17 Oct 2003   /  Science, 302 (5644), 449-53
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9.
A map of the interactome network of the metazoan C. elegans
Siming Li; Christopher M Armstrong; Nicolas Bertin; Hui Ge; Stuart Milstein; Mike Boxem; Pierre-Olivier Vidalain; Jing-Dong J Han; Alban Chesneau; Tong Hao; Debra S Goldberg; Ning Li; Monica Martinez; Jean-François Rual; Philippe Lamesch; Lai Xu; Muneesh Tewari; Sharyl L Wong; Lan V Zhang; Gabriel F Berriz; Laurent Jacotot; Philippe Vaglio; Jérôme Reboul; Tomoko Hirozane-Kishikawa; Qianru Li; Harrison W Gabel; Ahmed Elewa; Bridget Baumgartner; Debra J Rose; Haiyuan Yu; Stephanie Bosak; Reynaldo Sequerra; Andrew Fraser; Susan E Mango; William M Saxton; Susan Strome; Sander Van Den Heuvel; Fabio Piano; Jean Vandenhaute; Claude Sardet; Mark Gerstein; Lynn Doucette-Stamm; Kristin C Gunsalus; J Wade Harper; Michael E Cusick; Frederick P Roth; David E Hill; Marc Vidal;
23 Jan 2004   /  Science, 303 (5657), 540-3
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10.
Regulation of gene expression by a metabolic enzyme
David A Hall; Heng Zhu; Xiaowei Zhu; Thomas Royce; Mark Gerstein; Michael Snyder;
15 Oct 2004   /  Science, 306 (5695), 482-4
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11.
Global identification of human transcribed sequences with genome tiling arrays
Paul Bertone; Viktor Stolc; Thomas E Royce; Joel S Rozowsky; Alexander E Urban; Xiaowei Zhu; John L Rinn; Waraporn Tongprasit; Manoj Samanta; Sherman Weissman; Mark Gerstein; Michael Snyder;
24 Dec 2004   /  Science, 306 (5705), 2242-6
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12.
Data mining on the web
Andrew Smith; Mark Gerstein;
15 Dec 2006   /  Science, 314 (5806), 1682; author reply 1682
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13.
Chemistry Nobel rich in structure
Michael Seringhaus; Mark Gerstein;
5 Jan 2007   /  Science, 315 (5808), 40-1
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14.
Divergence of transcription factor binding sites across related yeast species
Anthony R Borneman; Tara A Gianoulis; Zhengdong D Zhang; Haiyuan Yu; Joel Rozowsky; Michael R Seringhaus; Lu Yong Wang; Mark Gerstein; Michael Snyder;
10 Aug 2007   /  Science, 317 (5839), 815-9
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15.
Genomic analysis of regulatory network dynamics reveals large topological changes
Nicholas M Luscombe; M Madan Babu; Haiyuan Yu; Michael Snyder; Sarah A Teichmann; Mark Gerstein;
16 Sep 2004   /  Nature, 431 (7006), 308-12
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16.
Global analysis of protein phosphorylation in yeast
Jason Ptacek; Geeta Devgan; Gregory Michaud; Heng Zhu; Xiaowei Zhu; Joseph Fasolo; Hong Guo; Ghil Jona; Ashton Breitkreutz; Richelle Sopko; Rhonda R McCartney; Martin C Schmidt; Najma Rachidi; Soo-Jung Lee; Angie S Mah; Lihao Meng; Michael J R Stark; David F Stern; Claudio De Virgilio; Mike Tyers; Brenda Andrews; Mark Gerstein; Barry Schweitzer; Paul F Predki; Michael Snyder;
1 Dec 2005   /  Nature, 438 (7068), 679-84
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17.
Tools needed to navigate landscape of the genome
Mark Gerstein;
6 Apr 2006   /  Nature, 440 (7085), 740
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18.
Structured digital abstract makes text mining easy
Mark Gerstein; Michael Seringhaus; Stanley Fields;
10 May 2007   /  Nature, 447 (7141), 142
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19.
DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states
White, Eric J.; Emanuelsson, Olof; Scalzo, David; Royce, Thomas; Kosak, Steven; Oakeley, Edward J.; Weissman, Sherman; Gerstein, Mark; Groudine, Mark; Snyder, Michael; SchĂĽbeler, Dirk;
6 Jun 2005
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20.
Relating three-dimensional structures to protein networks provides evolutionary insights
Philip M Kim; Long J Lu; Yu Xia; Mark B Gerstein;
22 Dec 2006   /  Science, 314 (5807), 1938-41
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21.
Paired-end mapping reveals extensive structural variation in the human genome
Jan O Korbel; Alexander Eckehart Urban; Jason P Affourtit; Brian Godwin; Fabian Grubert; Jan Fredrik Simons; Philip M Kim; Dean Palejev; Nicholas J Carriero; Lei Du; Bruce E Taillon; Zhoutao Chen; Andrea Tanzer; A C Eugenia Saunders; Jianxiang Chi; Fengtang Yang; Nigel P Carter; Matthew E Hurles; Sherman M Weissman; Timothy T Harkins; Mark B Gerstein; Michael Egholm; Michael Snyder;
19 Oct 2007   /  Science, 318 (5849), 420-6
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22.
Copy Number Variants and Segmental Duplications Show Different Formation Signature
Philip M. Kim; Jan O. Korbel; Xueying Chen; Mark B. Gerstein;
26 Sep 2007
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23.
Comparing Classical Pathways and Modern Networks: Towards the Development of an Edge Ontology
Long J. Lu; Andrea Sboner; Yuanpeng J. Huang; Hao Xin Lu; Tara A. Gianoulis; Kevin Y. Yip; Philip M. Kim; Gaetano T. Montelione; Mark B. Gerstein;
1 Jun 2007
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24.
SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics
Bertone, Paul; Kluger, Yuval; Lan, Ning; Zheng, Deyou; Christendat, Dinesh; Yee, Adelinda; Edwards, Aled M.; Arrowsmith, Cheryl H.; Montelione, Gaetano T.; Gerstein, Mark;
6 Jun 2005
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25.
Editorial
Greenbaum, Dov; Smith, Andrew; Gerstein, Mark;
6 Jun 2005
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26.
Information assessment on predicting protein-protein interactions
Lin, Nan; Wu, Baolin; Jansen, Ronald; Gerstein, Mark; Zhao, Hongyu;
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27.
Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon
Kumar, Anuj; Seringhaus, Michael; Biery, Matthew C.; Sarnovsky, Robert J.; Umansky, Lara; Piccirillo, Stacy; Heidtman, Matthew; Cheung, Kei-Hoi; Dobry, Craig J.; Gerstein, Mark B.; Craig, Nancy L.; Snyder, Michael;
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28.
Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes
Liu, Yang; Harrison, Paul M; Kunin, Victor; Gerstein, Mark;
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29.
Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
Kluger, Yuval; Basri, Ronen; Chang, Joseph T.; Gerstein, Mark;
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30.
Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
Yu, Haiyuan; Luscombe, Nicholas M.; Lu, Hao Xin; Zhu, Xiaowei; Xia, Yu; Han, Jing-Dong J.; Bertin, Nicolas; Chung, Sambath; Vidal, Marc; Gerstein, Mark;
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